Brain Morphometry BIRN Publications

2009

  1. Miller, M., Priebe, C.E., Qiu, A., Fischl, B., Kolasny, A., Brown, T., Park, Y., Ratnanather, J.T., Busa, E., Jovicich, J., Yu, P., Dickerson, B.C., Buckner, R.L., Morphometry BIRN. Collaborative Computational Anatomy: An MRI Morphometry Study of the Human Brain via Diffeomorphic Metric Mapping, Human Brain Mapping, 30(7): 2132-41, 2009.
  2. Fennema-Notestine C, Hagler DJ, Jr., McEvoy LK, Fleisher AS, Wu EH, Karow DS, Dale AM, the ADNI. Structural MRI biomarkers for preclinical and mild Alzheimer’s Disease. accepted, Human Brain Mapping 2009.
  3. McEvoy LK, Fennema-Notestine C, Roddey JC, Hagler DJ, Jr., Holland D, Karow DS, Pung CJ, Brewer JB, Dale AM. For the Alzheimer’s Disease Neuroimaging Initiative. Alzheimer Disease: Quantitative Structural Neuroimaging for Detection and Prediction of Clinical and Structural Changes in Mild Cognitive Impairment. Radiology, 251(1), 195-205, 2009.
  4. Panizzon MS, Fennema-Notestine C, Eyler LT, Jernigan TL, Prom-Wormley E, Neale MC, Jacobson K, Lyons MJ, Grant MD, Franz CE, Xian H, Tsuang MT, Fischl B, Seidman LJ, Dale AM, Kremen WS. Distinct genetic influences on cortical surface area and cortical thickness. Cerebral Cortex, 2009.

2008

  1. Parallel transport in diffeomorphisms distinguishes the time-dependent pattern of hippocampal surface deformation due to healthy aging and the dementia of the Alzheimer’s type. Anqi Qiu, Laurent Younes, Michael I. Miller and John G. Csernansky. NeuroImage, 40: 68-76 (2008).
  2. Truong, TK, Chen, B, Song, AW, Integrated SENSE DTI with correction of susceptibility- and eddy current-induced geometric distortions. Neuroimage. Mar 1;40(1):53-8 (2008).
  3. Chen, B, Song, AW, Diffusion tensor imaging fiber tracking with local tissue property sensitivity: phantom and in vivo validation. Magn Reson Imaging. Jan;26(1):103-8(2008).
  4. Keator, D.; Grethe, J.S.; Marcus, D.; Ozyurt, B.; Gadde, S.; Murphy, S.; Pieper, S.; Greve, D.; Notestine, R.; Bockholt, H.J; Papadopoulos, P.; Function BIRN; Morphometry BIRN; BIRN Coordinating Center. A National Human Neuroimaging Collaboratory Enabled By The Biomedical Informatics Research Network (BIRN). To be published in the March, 2008, IEEE Transactions on Information Technology in Biomedicine Special Bio-Grid edition.
  5. Goldman AL, Pezawas L, Mattay VS, Fischl B, Verchinski BA, Zoltick B, Weinberger DR, Meyer-Lindenberg A. Heritability of brain morphology related to schizophrenia: a large-scale automated magnetic resonance imaging segmentation study. Biol Psychiatry. 63(5):475-83 (2008).
  6. Dickerson BC, Fenstermacher E, Salat DH, Wolk DA, Maguire RP, Desikan R, Pacheco J, Quinn BT, Van der Kouwe A, Greve DN, Blacker D, Albert MS, Killiany RJ, Fischl B. Detection of cortical thickness correlates of cognitive performance: Reliability across MRI scan sessions, scanners, and field strengths. Neuroimage. 39(1):10-8, 2008.
  7. Y. Park, CE Priebe, MI Miller, NR Mohan, and KN Botteron. Statistical Analysis of Twin Populations using Dissimilarity Measurements in Hippocampus Shape Space. J Biomed Biotechnol. 2008:694297, 2008.
  8. N.A. Lee, C.E. Priebe, M.I. Miller, J.T. Ratnanather, “Validation of Alternating Kernel Mixture Method: Application to Tissue Segmentation of Cortical and Sub-cortical Structures,” Journal of Biomedicine and Biotechnology, accepted for publication, J Biomed Biotechnol. 2008:346129, 2008.

2007

  1. Bischoff-Grethe A, Ozyurt IB, Busa E, Quinn BT, Fennema-Notestine C, Clark CP, Morris S, Bondi MW, Jernigan TL, Brown GG, and Fischl B. A technique for the deidentification of structural brain MR images. Human Brain Mapping 28:892-903 (2007).
  2. Marcus, D.S., Olsen T., Ramaratnam M., and Buckner, R.L., The Extensible Neuroimaging Archive Toolkit (XNAT): An informatics platform for managing, exploring, and sharing neuroimaging data. Neuroinformatics. Spring;5(1):11-34 (2007).
  3. Wakana S, Caprihan A, Panzenboeck MM, Fallon JH, Perry M, Gollub RL, Hua K, Zhang J, Jiang H, Dubey P, Blitz A, van Zijl P, Mori. S. Reproducibility of quantitative tractography methods applied to cerebral white matter. Neuroimage. 36(3):630-44 (2007).
  4. Farrell JA, Landman BA, Jones CK, Smith SA, Prince JL, van Zijl PC, Mori S. Effects of signal-to-noise ratio on the accuracy and reproducibility of diffusion tensor imaging-derived fractional anisotropy, mean diffusivity, and principal eigenvector measurements at 1.5 T. J Magn Reson Imaging. 26(3):756-67 (2007).
  5. Landman BA, Farrell JA, Jones CK, Smith SA, Prince JL, Mori S. Effects of diffusion weighting schemes on the reproducibility of DTI-derived fractional anisotropy, mean diffusivity, and principal eigenvector measurements at 1.5T. Neuroimage. 36(4):1123-38 (2007).
  6. Yu P, Grant PE, Qi Y, Han X, Ségonne F, Pienaar R, Busa E, Pacheco J, Makris N, Buckner RL, Golland P, Fischl B. Cortical surface shape analysis based on spherical wavelets. IEEE Trans Med Imaging. 26(4):582-97 (2007).
  7. Fennema-Notestine, C, Gamst, AC, Quinn, BT, Pacheco, J, Jernigan, TL, Thal, L, Buckner, R, Killiany, R, Blacker, D, Dale, AM, Fischl, B, Dickerson, B, & Gollub, RL. Feasibility of multi-site clinical structural neuroimaging studies of aging using legacy data. Neuroinformatics, 5(4), 235-245 (2007).
  8. Pohl KM, Fisher J, Bouix S, Shenton M, McCarley RW, Grimson WE, Kikinis R, Wells WM. Using the logarithm of odds to define a vector space on probabilistic atlases. Med Image Anal. 11(5):465-77 (2007).
  9. Pohl KM, Bouix S, Nakamura M, Rohlfing T, McCarley RW, Kikinis R, Grimson WE, Shenton ME, Wells WM. A hierarchical algorithm for MR brain image parcellation. IEEE Trans Med Imaging. 26(9):1201-12 (2007).
  10. Han X, Fischl B. Atlas renormalization for improved brain MR image segmentation across scanner platforms. IEEE Trans Med Imaging. 26(4):479-86 (2007).
  11. Postelnicu G, Zollei L, Desikan R, Fischl B. Geometry driven volumetric registration. Inf Process Med Imaging. 20:675-86 (2007).

2006

  1. Chen B, Guo H, Song AW. Correction for direction-dependent distortions in diffusion tensor imaging using matched magnetic field maps. Neuroimage Mar;30(1):121-9 (2006).
  2. Pohl KM, Fisher J, Shenton M, McCarley RE, Grimson WE, Kikinis R , Wells WM. Logarithm Odds Maps for Shape Representation. MICCAI 2006, Copenhagen, Denmark, LNCS 4191, pp. 955-963 (2006).
  3. O’Donnell L, Westin C-F. High-Dimensional White Matter Atlas Generation and Group Analysis. MICCAI 2006, Copenhagen, Denmark, LNCS 4191, pp. 243-251 (2006)
  4. Pohl KM, Fisher J, Grimson WE, Kikinis R , Wells WM. A Bayesian model for joint segmentation and registration. NeuroImage 31(1):228-239 (2006).
  5. Pieper S, Lorensen W, Schroeder W, Kikinis R. The NA-MIC Kit: ITK, VTK, Pipelines, Grids and 3D Slicer as An Open Platform for the Medical Image Computing Community. IEEE Symposium on Biomedical Imaging ISBI. 698-701 (2006).
  6. Murphy SN, Mendis ME, Grethe JS, Gollub RL, Kennedy D, Rosen BR.A web portal that enables collaborative use of advanced medical image processing and informatics tools through the Biomedical Informatics Research Network (BIRN). AMIA Annu Symp Proc. 579-83 (2006).
  7. Fennema-Notestine C, Ozyurt IB, Clark CP, Morris S, Bischoff-Grethe A, Bondi MW, Jernigan TL, Fischl B, Segonne F, Shattuck DW, Leahy RM, Rex DE, Toga AW, Zou KH, Brown GG. Quantitative evaluation of automated skull-stripping methods applied to contemporary and legacy images: Effects of diagnosis, bias correction, and slice location. Hum Brain Mapp. Feb;27(2):99-113 (2006).
  8. Han X, Jovicich J, Salat D, van der Kouwe A, Quinn B, Czanner S, Busa E, Pacheco J, Albert M, Killiany R, Maguire P, Rosas D, Makris N, Dale A, Dickerson B, Fischl B. Reliability of MRI-derived measurements of human cerebral cortical thickness: the effects of field strength, scanner upgrade and manufacturer. Neuroimage. Aug 1;32(1):180-94 (2006).
  9. Jovicich J, Czanner S, Greve D, Haley E, van der Kouwe A, Gollub R, Kennedy D, Schmitt F, Brown G, Macfall J, Fischl B, Dale A. Reliability in multi-site structural MRI studies: effects of gradient non-linearity correction on phantom and human data. Neuroimage. Apr 1;30(2):436-43 (2006).
  10. Turner JA, Smyth P, Macciardi F, Fallon JH, Kennedy JL, Potkin SG. Imaging phenotypes and genotypes in schizophrenia. Neuroinformatics 4(1):21-49 (2006).
  11. MacFall, J. R., Taylor, W. D., Rex, D. E., Pieper, S., Payne, M. E., McQuoid, D. R., Steffens, D. C., Kikinis, R., Toga, A. W., and Krishnan, K. R. Lobar distribution of lesion volumes in late-life depression: the Biomedical Informatics Research Network (BIRN). Neuropsychopharmacology, 31: 1500-1507 (2006).
  12. van der Kouwe A, Benner T, Dale A. Real-Time Prospective Rigid Body Motion Correction and Shimming Using Clover-Leaf Navigators. Magnetic Resonance in Medicine Nov;56(5):1019-32 (2006).
  13. B.T.T. Yeo, W. Ou, P. Golland. Invertible Filter Banks on the 2-Sphere. In Proceedings of ICIP: International Conference in Image Processing, 2161-2164 (2006).
  14. P. Yu, X. Han, F. Segonne, A. K. Liu, R. A. Poldrack, P. Golland, and B. Fischl. Shape-based Discrimination and Classification of Cortical surface. In Proceedings of ICPR: International Conference on Pattern Recognition, 445-448 (2006).
  15. P. Yu, X. Han, F. Segonne, R. L. Buckner, R. Pienaar, P. Golland, P. E. Grant and B. Fischl. Cortical Surface Shape Analysis Based on Spherical Wavelet Transformation. In Proceedings of MMBIA: IEEE Computer Society Workshop on Mathematical Methods in Biomedical Image Analysis, 60-67 (2006).
  16. Desikan RS, Ségonne F, Fischl B, Quinn BT, Dickerson BC, Blacker D, Buckner RL, Dale AM, Maguire RP, Hyman BT, Albert MS, Killiany RJ. An automated labeling system for subdividing the human cerebral cortex on MRI scans into gyral based regions of interest. Neuroimage. 31(3):968-80 (2006).

2005

  1. Neu SC, Valentino DJ, Toga AW. The LONI Debabeler: a mediator for neuroimaging software. Neuroimage Feb 15;24(4):1170-9 (2005)
  2. Keator D, Gadde S, Grethe J, Taylor D, FIRST BIRN, Potkin SA. General XML Schema and Associated SPM Toolbox for Storage and Retrieval of Neuro-Imaging Results and Anatomical Labels. Neuroinformatics, 4(2) (2005).
  3. Pohl KM, Fisher J, Kikinis R, Grimson WE, Wells WM. Shape Based Segmentation of Anatomical Structures in Magnetic Resonance Images.Proc. ICCV 2005: Computer Vision for Biomedical Image Applications: Current Techniques and Future Trend, An International Conference on Computer Vision Workshop, Beijing, China, Springer-Verlag, LNCS 3765, (2005).
  4. Pohl KM, Fisher J, Levitt JJ, Shenton ME, Kikinis R, Grimson WE, Wells WM. A Unifying Approach to Registration, Segmentation, and Intensity Correction. MICCAI 2005, Palm Springs, CA, LNCS 3749, pp. 310-28 (2005).
  5. O’Donnell L, Westin C-F. White Matter Tract Clustering and Correspondence in Populations. MICCAI 2005, Palm Springs, CA, LNCS 3749, pp. 140-47 (2005).

2004

  1. Rex DE, Shattuck DW, Woods RP, Narr KL, Luders E, Rehm K, Stolzner SE, Rottenberg DA, Toga AW. A meta-algorithm for brain extraction in MRI. Neuroimage. Oct;23(2):625-37 (2004)
BIRN is supported by NIH grants 1U24-RR025736, U24-RR021992, U24-RR021760 and by the Collaborative Tools Support Network Award 1U24-RR026057-01.
 
BIRN – Biomedical Informatics Research Network |  Brain Morphometry BIRN Publications

Brain Morphometry BIRN Publications

2009

  1. Miller, M., Priebe, C.E., Qiu, A., Fischl, B., Kolasny, A., Brown, T., Park, Y., Ratnanather, J.T., Busa, E., Jovicich, J., Yu, P., Dickerson, B.C., Buckner, R.L., Morphometry BIRN. Collaborative Computational Anatomy: An MRI Morphometry Study of the Human Brain via Diffeomorphic Metric Mapping, Human Brain Mapping, 30(7): 2132-41, 2009.
  2. Fennema-Notestine C, Hagler DJ, Jr., McEvoy LK, Fleisher AS, Wu EH, Karow DS, Dale AM, the ADNI. Structural MRI biomarkers for preclinical and mild Alzheimer’s Disease. accepted, Human Brain Mapping 2009.
  3. McEvoy LK, Fennema-Notestine C, Roddey JC, Hagler DJ, Jr., Holland D, Karow DS, Pung CJ, Brewer JB, Dale AM. For the Alzheimer’s Disease Neuroimaging Initiative. Alzheimer Disease: Quantitative Structural Neuroimaging for Detection and Prediction of Clinical and Structural Changes in Mild Cognitive Impairment. Radiology, 251(1), 195-205, 2009.
  4. Panizzon MS, Fennema-Notestine C, Eyler LT, Jernigan TL, Prom-Wormley E, Neale MC, Jacobson K, Lyons MJ, Grant MD, Franz CE, Xian H, Tsuang MT, Fischl B, Seidman LJ, Dale AM, Kremen WS. Distinct genetic influences on cortical surface area and cortical thickness. Cerebral Cortex, 2009.

2008

  1. Parallel transport in diffeomorphisms distinguishes the time-dependent pattern of hippocampal surface deformation due to healthy aging and the dementia of the Alzheimer’s type. Anqi Qiu, Laurent Younes, Michael I. Miller and John G. Csernansky. NeuroImage, 40: 68-76 (2008).
  2. Truong, TK, Chen, B, Song, AW, Integrated SENSE DTI with correction of susceptibility- and eddy current-induced geometric distortions. Neuroimage. Mar 1;40(1):53-8 (2008).
  3. Chen, B, Song, AW, Diffusion tensor imaging fiber tracking with local tissue property sensitivity: phantom and in vivo validation. Magn Reson Imaging. Jan;26(1):103-8(2008).
  4. Keator, D.; Grethe, J.S.; Marcus, D.; Ozyurt, B.; Gadde, S.; Murphy, S.; Pieper, S.; Greve, D.; Notestine, R.; Bockholt, H.J; Papadopoulos, P.; Function BIRN; Morphometry BIRN; BIRN Coordinating Center. A National Human Neuroimaging Collaboratory Enabled By The Biomedical Informatics Research Network (BIRN). To be published in the March, 2008, IEEE Transactions on Information Technology in Biomedicine Special Bio-Grid edition.
  5. Goldman AL, Pezawas L, Mattay VS, Fischl B, Verchinski BA, Zoltick B, Weinberger DR, Meyer-Lindenberg A. Heritability of brain morphology related to schizophrenia: a large-scale automated magnetic resonance imaging segmentation study. Biol Psychiatry. 63(5):475-83 (2008).
  6. Dickerson BC, Fenstermacher E, Salat DH, Wolk DA, Maguire RP, Desikan R, Pacheco J, Quinn BT, Van der Kouwe A, Greve DN, Blacker D, Albert MS, Killiany RJ, Fischl B. Detection of cortical thickness correlates of cognitive performance: Reliability across MRI scan sessions, scanners, and field strengths. Neuroimage. 39(1):10-8, 2008.
  7. Y. Park, CE Priebe, MI Miller, NR Mohan, and KN Botteron. Statistical Analysis of Twin Populations using Dissimilarity Measurements in Hippocampus Shape Space. J Biomed Biotechnol. 2008:694297, 2008.
  8. N.A. Lee, C.E. Priebe, M.I. Miller, J.T. Ratnanather, “Validation of Alternating Kernel Mixture Method: Application to Tissue Segmentation of Cortical and Sub-cortical Structures,” Journal of Biomedicine and Biotechnology, accepted for publication, J Biomed Biotechnol. 2008:346129, 2008.

2007

  1. Bischoff-Grethe A, Ozyurt IB, Busa E, Quinn BT, Fennema-Notestine C, Clark CP, Morris S, Bondi MW, Jernigan TL, Brown GG, and Fischl B. A technique for the deidentification of structural brain MR images. Human Brain Mapping 28:892-903 (2007).
  2. Marcus, D.S., Olsen T., Ramaratnam M., and Buckner, R.L., The Extensible Neuroimaging Archive Toolkit (XNAT): An informatics platform for managing, exploring, and sharing neuroimaging data. Neuroinformatics. Spring;5(1):11-34 (2007).
  3. Wakana S, Caprihan A, Panzenboeck MM, Fallon JH, Perry M, Gollub RL, Hua K, Zhang J, Jiang H, Dubey P, Blitz A, van Zijl P, Mori. S. Reproducibility of quantitative tractography methods applied to cerebral white matter. Neuroimage. 36(3):630-44 (2007).
  4. Farrell JA, Landman BA, Jones CK, Smith SA, Prince JL, van Zijl PC, Mori S. Effects of signal-to-noise ratio on the accuracy and reproducibility of diffusion tensor imaging-derived fractional anisotropy, mean diffusivity, and principal eigenvector measurements at 1.5 T. J Magn Reson Imaging. 26(3):756-67 (2007).
  5. Landman BA, Farrell JA, Jones CK, Smith SA, Prince JL, Mori S. Effects of diffusion weighting schemes on the reproducibility of DTI-derived fractional anisotropy, mean diffusivity, and principal eigenvector measurements at 1.5T. Neuroimage. 36(4):1123-38 (2007).
  6. Yu P, Grant PE, Qi Y, Han X, Ségonne F, Pienaar R, Busa E, Pacheco J, Makris N, Buckner RL, Golland P, Fischl B. Cortical surface shape analysis based on spherical wavelets. IEEE Trans Med Imaging. 26(4):582-97 (2007).
  7. Fennema-Notestine, C, Gamst, AC, Quinn, BT, Pacheco, J, Jernigan, TL, Thal, L, Buckner, R, Killiany, R, Blacker, D, Dale, AM, Fischl, B, Dickerson, B, & Gollub, RL. Feasibility of multi-site clinical structural neuroimaging studies of aging using legacy data. Neuroinformatics, 5(4), 235-245 (2007).
  8. Pohl KM, Fisher J, Bouix S, Shenton M, McCarley RW, Grimson WE, Kikinis R, Wells WM. Using the logarithm of odds to define a vector space on probabilistic atlases. Med Image Anal. 11(5):465-77 (2007).
  9. Pohl KM, Bouix S, Nakamura M, Rohlfing T, McCarley RW, Kikinis R, Grimson WE, Shenton ME, Wells WM. A hierarchical algorithm for MR brain image parcellation. IEEE Trans Med Imaging. 26(9):1201-12 (2007).
  10. Han X, Fischl B. Atlas renormalization for improved brain MR image segmentation across scanner platforms. IEEE Trans Med Imaging. 26(4):479-86 (2007).
  11. Postelnicu G, Zollei L, Desikan R, Fischl B. Geometry driven volumetric registration. Inf Process Med Imaging. 20:675-86 (2007).

2006

  1. Chen B, Guo H, Song AW. Correction for direction-dependent distortions in diffusion tensor imaging using matched magnetic field maps. Neuroimage Mar;30(1):121-9 (2006).
  2. Pohl KM, Fisher J, Shenton M, McCarley RE, Grimson WE, Kikinis R , Wells WM. Logarithm Odds Maps for Shape Representation. MICCAI 2006, Copenhagen, Denmark, LNCS 4191, pp. 955-963 (2006).
  3. O’Donnell L, Westin C-F. High-Dimensional White Matter Atlas Generation and Group Analysis. MICCAI 2006, Copenhagen, Denmark, LNCS 4191, pp. 243-251 (2006)
  4. Pohl KM, Fisher J, Grimson WE, Kikinis R , Wells WM. A Bayesian model for joint segmentation and registration. NeuroImage 31(1):228-239 (2006).
  5. Pieper S, Lorensen W, Schroeder W, Kikinis R. The NA-MIC Kit: ITK, VTK, Pipelines, Grids and 3D Slicer as An Open Platform for the Medical Image Computing Community. IEEE Symposium on Biomedical Imaging ISBI. 698-701 (2006).
  6. Murphy SN, Mendis ME, Grethe JS, Gollub RL, Kennedy D, Rosen BR.A web portal that enables collaborative use of advanced medical image processing and informatics tools through the Biomedical Informatics Research Network (BIRN). AMIA Annu Symp Proc. 579-83 (2006).
  7. Fennema-Notestine C, Ozyurt IB, Clark CP, Morris S, Bischoff-Grethe A, Bondi MW, Jernigan TL, Fischl B, Segonne F, Shattuck DW, Leahy RM, Rex DE, Toga AW, Zou KH, Brown GG. Quantitative evaluation of automated skull-stripping methods applied to contemporary and legacy images: Effects of diagnosis, bias correction, and slice location. Hum Brain Mapp. Feb;27(2):99-113 (2006).
  8. Han X, Jovicich J, Salat D, van der Kouwe A, Quinn B, Czanner S, Busa E, Pacheco J, Albert M, Killiany R, Maguire P, Rosas D, Makris N, Dale A, Dickerson B, Fischl B. Reliability of MRI-derived measurements of human cerebral cortical thickness: the effects of field strength, scanner upgrade and manufacturer. Neuroimage. Aug 1;32(1):180-94 (2006).
  9. Jovicich J, Czanner S, Greve D, Haley E, van der Kouwe A, Gollub R, Kennedy D, Schmitt F, Brown G, Macfall J, Fischl B, Dale A. Reliability in multi-site structural MRI studies: effects of gradient non-linearity correction on phantom and human data. Neuroimage. Apr 1;30(2):436-43 (2006).
  10. Turner JA, Smyth P, Macciardi F, Fallon JH, Kennedy JL, Potkin SG. Imaging phenotypes and genotypes in schizophrenia. Neuroinformatics 4(1):21-49 (2006).
  11. MacFall, J. R., Taylor, W. D., Rex, D. E., Pieper, S., Payne, M. E., McQuoid, D. R., Steffens, D. C., Kikinis, R., Toga, A. W., and Krishnan, K. R. Lobar distribution of lesion volumes in late-life depression: the Biomedical Informatics Research Network (BIRN). Neuropsychopharmacology, 31: 1500-1507 (2006).
  12. van der Kouwe A, Benner T, Dale A. Real-Time Prospective Rigid Body Motion Correction and Shimming Using Clover-Leaf Navigators. Magnetic Resonance in Medicine Nov;56(5):1019-32 (2006).
  13. B.T.T. Yeo, W. Ou, P. Golland. Invertible Filter Banks on the 2-Sphere. In Proceedings of ICIP: International Conference in Image Processing, 2161-2164 (2006).
  14. P. Yu, X. Han, F. Segonne, A. K. Liu, R. A. Poldrack, P. Golland, and B. Fischl. Shape-based Discrimination and Classification of Cortical surface. In Proceedings of ICPR: International Conference on Pattern Recognition, 445-448 (2006).
  15. P. Yu, X. Han, F. Segonne, R. L. Buckner, R. Pienaar, P. Golland, P. E. Grant and B. Fischl. Cortical Surface Shape Analysis Based on Spherical Wavelet Transformation. In Proceedings of MMBIA: IEEE Computer Society Workshop on Mathematical Methods in Biomedical Image Analysis, 60-67 (2006).
  16. Desikan RS, Ségonne F, Fischl B, Quinn BT, Dickerson BC, Blacker D, Buckner RL, Dale AM, Maguire RP, Hyman BT, Albert MS, Killiany RJ. An automated labeling system for subdividing the human cerebral cortex on MRI scans into gyral based regions of interest. Neuroimage. 31(3):968-80 (2006).

2005

  1. Neu SC, Valentino DJ, Toga AW. The LONI Debabeler: a mediator for neuroimaging software. Neuroimage Feb 15;24(4):1170-9 (2005)
  2. Keator D, Gadde S, Grethe J, Taylor D, FIRST BIRN, Potkin SA. General XML Schema and Associated SPM Toolbox for Storage and Retrieval of Neuro-Imaging Results and Anatomical Labels. Neuroinformatics, 4(2) (2005).
  3. Pohl KM, Fisher J, Kikinis R, Grimson WE, Wells WM. Shape Based Segmentation of Anatomical Structures in Magnetic Resonance Images.Proc. ICCV 2005: Computer Vision for Biomedical Image Applications: Current Techniques and Future Trend, An International Conference on Computer Vision Workshop, Beijing, China, Springer-Verlag, LNCS 3765, (2005).
  4. Pohl KM, Fisher J, Levitt JJ, Shenton ME, Kikinis R, Grimson WE, Wells WM. A Unifying Approach to Registration, Segmentation, and Intensity Correction. MICCAI 2005, Palm Springs, CA, LNCS 3749, pp. 310-28 (2005).
  5. O’Donnell L, Westin C-F. White Matter Tract Clustering and Correspondence in Populations. MICCAI 2005, Palm Springs, CA, LNCS 3749, pp. 140-47 (2005).

2004

  1. Rex DE, Shattuck DW, Woods RP, Narr KL, Luders E, Rehm K, Stolzner SE, Rottenberg DA, Toga AW. A meta-algorithm for brain extraction in MRI. Neuroimage. Oct;23(2):625-37 (2004)
BIRN is supported by NIH grants 1U24-RR025736, U24-RR021992, U24-RR021760 and by the Collaborative Tools Support Network Award 1U24-RR026057-01.
 
BIRN – Biomedical Informatics Research Network |  Brain Morphometry BIRN Publications

Brain Morphometry BIRN Publications

2009

  1. Miller, M., Priebe, C.E., Qiu, A., Fischl, B., Kolasny, A., Brown, T., Park, Y., Ratnanather, J.T., Busa, E., Jovicich, J., Yu, P., Dickerson, B.C., Buckner, R.L., Morphometry BIRN. Collaborative Computational Anatomy: An MRI Morphometry Study of the Human Brain via Diffeomorphic Metric Mapping, Human Brain Mapping, 30(7): 2132-41, 2009.
  2. Fennema-Notestine C, Hagler DJ, Jr., McEvoy LK, Fleisher AS, Wu EH, Karow DS, Dale AM, the ADNI. Structural MRI biomarkers for preclinical and mild Alzheimer’s Disease. accepted, Human Brain Mapping 2009.
  3. McEvoy LK, Fennema-Notestine C, Roddey JC, Hagler DJ, Jr., Holland D, Karow DS, Pung CJ, Brewer JB, Dale AM. For the Alzheimer’s Disease Neuroimaging Initiative. Alzheimer Disease: Quantitative Structural Neuroimaging for Detection and Prediction of Clinical and Structural Changes in Mild Cognitive Impairment. Radiology, 251(1), 195-205, 2009.
  4. Panizzon MS, Fennema-Notestine C, Eyler LT, Jernigan TL, Prom-Wormley E, Neale MC, Jacobson K, Lyons MJ, Grant MD, Franz CE, Xian H, Tsuang MT, Fischl B, Seidman LJ, Dale AM, Kremen WS. Distinct genetic influences on cortical surface area and cortical thickness. Cerebral Cortex, 2009.

2008

  1. Parallel transport in diffeomorphisms distinguishes the time-dependent pattern of hippocampal surface deformation due to healthy aging and the dementia of the Alzheimer’s type. Anqi Qiu, Laurent Younes, Michael I. Miller and John G. Csernansky. NeuroImage, 40: 68-76 (2008).
  2. Truong, TK, Chen, B, Song, AW, Integrated SENSE DTI with correction of susceptibility- and eddy current-induced geometric distortions. Neuroimage. Mar 1;40(1):53-8 (2008).
  3. Chen, B, Song, AW, Diffusion tensor imaging fiber tracking with local tissue property sensitivity: phantom and in vivo validation. Magn Reson Imaging. Jan;26(1):103-8(2008).
  4. Keator, D.; Grethe, J.S.; Marcus, D.; Ozyurt, B.; Gadde, S.; Murphy, S.; Pieper, S.; Greve, D.; Notestine, R.; Bockholt, H.J; Papadopoulos, P.; Function BIRN; Morphometry BIRN; BIRN Coordinating Center. A National Human Neuroimaging Collaboratory Enabled By The Biomedical Informatics Research Network (BIRN). To be published in the March, 2008, IEEE Transactions on Information Technology in Biomedicine Special Bio-Grid edition.
  5. Goldman AL, Pezawas L, Mattay VS, Fischl B, Verchinski BA, Zoltick B, Weinberger DR, Meyer-Lindenberg A. Heritability of brain morphology related to schizophrenia: a large-scale automated magnetic resonance imaging segmentation study. Biol Psychiatry. 63(5):475-83 (2008).
  6. Dickerson BC, Fenstermacher E, Salat DH, Wolk DA, Maguire RP, Desikan R, Pacheco J, Quinn BT, Van der Kouwe A, Greve DN, Blacker D, Albert MS, Killiany RJ, Fischl B. Detection of cortical thickness correlates of cognitive performance: Reliability across MRI scan sessions, scanners, and field strengths. Neuroimage. 39(1):10-8, 2008.
  7. Y. Park, CE Priebe, MI Miller, NR Mohan, and KN Botteron. Statistical Analysis of Twin Populations using Dissimilarity Measurements in Hippocampus Shape Space. J Biomed Biotechnol. 2008:694297, 2008.
  8. N.A. Lee, C.E. Priebe, M.I. Miller, J.T. Ratnanather, “Validation of Alternating Kernel Mixture Method: Application to Tissue Segmentation of Cortical and Sub-cortical Structures,” Journal of Biomedicine and Biotechnology, accepted for publication, J Biomed Biotechnol. 2008:346129, 2008.

2007

  1. Bischoff-Grethe A, Ozyurt IB, Busa E, Quinn BT, Fennema-Notestine C, Clark CP, Morris S, Bondi MW, Jernigan TL, Brown GG, and Fischl B. A technique for the deidentification of structural brain MR images. Human Brain Mapping 28:892-903 (2007).
  2. Marcus, D.S., Olsen T., Ramaratnam M., and Buckner, R.L., The Extensible Neuroimaging Archive Toolkit (XNAT): An informatics platform for managing, exploring, and sharing neuroimaging data. Neuroinformatics. Spring;5(1):11-34 (2007).
  3. Wakana S, Caprihan A, Panzenboeck MM, Fallon JH, Perry M, Gollub RL, Hua K, Zhang J, Jiang H, Dubey P, Blitz A, van Zijl P, Mori. S. Reproducibility of quantitative tractography methods applied to cerebral white matter. Neuroimage. 36(3):630-44 (2007).
  4. Farrell JA, Landman BA, Jones CK, Smith SA, Prince JL, van Zijl PC, Mori S. Effects of signal-to-noise ratio on the accuracy and reproducibility of diffusion tensor imaging-derived fractional anisotropy, mean diffusivity, and principal eigenvector measurements at 1.5 T. J Magn Reson Imaging. 26(3):756-67 (2007).
  5. Landman BA, Farrell JA, Jones CK, Smith SA, Prince JL, Mori S. Effects of diffusion weighting schemes on the reproducibility of DTI-derived fractional anisotropy, mean diffusivity, and principal eigenvector measurements at 1.5T. Neuroimage. 36(4):1123-38 (2007).
  6. Yu P, Grant PE, Qi Y, Han X, Ségonne F, Pienaar R, Busa E, Pacheco J, Makris N, Buckner RL, Golland P, Fischl B. Cortical surface shape analysis based on spherical wavelets. IEEE Trans Med Imaging. 26(4):582-97 (2007).
  7. Fennema-Notestine, C, Gamst, AC, Quinn, BT, Pacheco, J, Jernigan, TL, Thal, L, Buckner, R, Killiany, R, Blacker, D, Dale, AM, Fischl, B, Dickerson, B, & Gollub, RL. Feasibility of multi-site clinical structural neuroimaging studies of aging using legacy data. Neuroinformatics, 5(4), 235-245 (2007).
  8. Pohl KM, Fisher J, Bouix S, Shenton M, McCarley RW, Grimson WE, Kikinis R, Wells WM. Using the logarithm of odds to define a vector space on probabilistic atlases. Med Image Anal. 11(5):465-77 (2007).
  9. Pohl KM, Bouix S, Nakamura M, Rohlfing T, McCarley RW, Kikinis R, Grimson WE, Shenton ME, Wells WM. A hierarchical algorithm for MR brain image parcellation. IEEE Trans Med Imaging. 26(9):1201-12 (2007).
  10. Han X, Fischl B. Atlas renormalization for improved brain MR image segmentation across scanner platforms. IEEE Trans Med Imaging. 26(4):479-86 (2007).
  11. Postelnicu G, Zollei L, Desikan R, Fischl B. Geometry driven volumetric registration. Inf Process Med Imaging. 20:675-86 (2007).

2006

  1. Chen B, Guo H, Song AW. Correction for direction-dependent distortions in diffusion tensor imaging using matched magnetic field maps. Neuroimage Mar;30(1):121-9 (2006).
  2. Pohl KM, Fisher J, Shenton M, McCarley RE, Grimson WE, Kikinis R , Wells WM. Logarithm Odds Maps for Shape Representation. MICCAI 2006, Copenhagen, Denmark, LNCS 4191, pp. 955-963 (2006).
  3. O’Donnell L, Westin C-F. High-Dimensional White Matter Atlas Generation and Group Analysis. MICCAI 2006, Copenhagen, Denmark, LNCS 4191, pp. 243-251 (2006)
  4. Pohl KM, Fisher J, Grimson WE, Kikinis R , Wells WM. A Bayesian model for joint segmentation and registration. NeuroImage 31(1):228-239 (2006).
  5. Pieper S, Lorensen W, Schroeder W, Kikinis R. The NA-MIC Kit: ITK, VTK, Pipelines, Grids and 3D Slicer as An Open Platform for the Medical Image Computing Community. IEEE Symposium on Biomedical Imaging ISBI. 698-701 (2006).
  6. Murphy SN, Mendis ME, Grethe JS, Gollub RL, Kennedy D, Rosen BR.A web portal that enables collaborative use of advanced medical image processing and informatics tools through the Biomedical Informatics Research Network (BIRN). AMIA Annu Symp Proc. 579-83 (2006).
  7. Fennema-Notestine C, Ozyurt IB, Clark CP, Morris S, Bischoff-Grethe A, Bondi MW, Jernigan TL, Fischl B, Segonne F, Shattuck DW, Leahy RM, Rex DE, Toga AW, Zou KH, Brown GG. Quantitative evaluation of automated skull-stripping methods applied to contemporary and legacy images: Effects of diagnosis, bias correction, and slice location. Hum Brain Mapp. Feb;27(2):99-113 (2006).
  8. Han X, Jovicich J, Salat D, van der Kouwe A, Quinn B, Czanner S, Busa E, Pacheco J, Albert M, Killiany R, Maguire P, Rosas D, Makris N, Dale A, Dickerson B, Fischl B. Reliability of MRI-derived measurements of human cerebral cortical thickness: the effects of field strength, scanner upgrade and manufacturer. Neuroimage. Aug 1;32(1):180-94 (2006).
  9. Jovicich J, Czanner S, Greve D, Haley E, van der Kouwe A, Gollub R, Kennedy D, Schmitt F, Brown G, Macfall J, Fischl B, Dale A. Reliability in multi-site structural MRI studies: effects of gradient non-linearity correction on phantom and human data. Neuroimage. Apr 1;30(2):436-43 (2006).
  10. Turner JA, Smyth P, Macciardi F, Fallon JH, Kennedy JL, Potkin SG. Imaging phenotypes and genotypes in schizophrenia. Neuroinformatics 4(1):21-49 (2006).
  11. MacFall, J. R., Taylor, W. D., Rex, D. E., Pieper, S., Payne, M. E., McQuoid, D. R., Steffens, D. C., Kikinis, R., Toga, A. W., and Krishnan, K. R. Lobar distribution of lesion volumes in late-life depression: the Biomedical Informatics Research Network (BIRN). Neuropsychopharmacology, 31: 1500-1507 (2006).
  12. van der Kouwe A, Benner T, Dale A. Real-Time Prospective Rigid Body Motion Correction and Shimming Using Clover-Leaf Navigators. Magnetic Resonance in Medicine Nov;56(5):1019-32 (2006).
  13. B.T.T. Yeo, W. Ou, P. Golland. Invertible Filter Banks on the 2-Sphere. In Proceedings of ICIP: International Conference in Image Processing, 2161-2164 (2006).
  14. P. Yu, X. Han, F. Segonne, A. K. Liu, R. A. Poldrack, P. Golland, and B. Fischl. Shape-based Discrimination and Classification of Cortical surface. In Proceedings of ICPR: International Conference on Pattern Recognition, 445-448 (2006).
  15. P. Yu, X. Han, F. Segonne, R. L. Buckner, R. Pienaar, P. Golland, P. E. Grant and B. Fischl. Cortical Surface Shape Analysis Based on Spherical Wavelet Transformation. In Proceedings of MMBIA: IEEE Computer Society Workshop on Mathematical Methods in Biomedical Image Analysis, 60-67 (2006).
  16. Desikan RS, Ségonne F, Fischl B, Quinn BT, Dickerson BC, Blacker D, Buckner RL, Dale AM, Maguire RP, Hyman BT, Albert MS, Killiany RJ. An automated labeling system for subdividing the human cerebral cortex on MRI scans into gyral based regions of interest. Neuroimage. 31(3):968-80 (2006).

2005

  1. Neu SC, Valentino DJ, Toga AW. The LONI Debabeler: a mediator for neuroimaging software. Neuroimage Feb 15;24(4):1170-9 (2005)
  2. Keator D, Gadde S, Grethe J, Taylor D, FIRST BIRN, Potkin SA. General XML Schema and Associated SPM Toolbox for Storage and Retrieval of Neuro-Imaging Results and Anatomical Labels. Neuroinformatics, 4(2) (2005).
  3. Pohl KM, Fisher J, Kikinis R, Grimson WE, Wells WM. Shape Based Segmentation of Anatomical Structures in Magnetic Resonance Images.Proc. ICCV 2005: Computer Vision for Biomedical Image Applications: Current Techniques and Future Trend, An International Conference on Computer Vision Workshop, Beijing, China, Springer-Verlag, LNCS 3765, (2005).
  4. Pohl KM, Fisher J, Levitt JJ, Shenton ME, Kikinis R, Grimson WE, Wells WM. A Unifying Approach to Registration, Segmentation, and Intensity Correction. MICCAI 2005, Palm Springs, CA, LNCS 3749, pp. 310-28 (2005).
  5. O’Donnell L, Westin C-F. White Matter Tract Clustering and Correspondence in Populations. MICCAI 2005, Palm Springs, CA, LNCS 3749, pp. 140-47 (2005).

2004

  1. Rex DE, Shattuck DW, Woods RP, Narr KL, Luders E, Rehm K, Stolzner SE, Rottenberg DA, Toga AW. A meta-algorithm for brain extraction in MRI. Neuroimage. Oct;23(2):625-37 (2004)
BIRN is supported by NIH grants 1U24-RR025736, U24-RR021992, U24-RR021760 and by the Collaborative Tools Support Network Award 1U24-RR026057-01.