Mouse BIRN Publications

Papers

  1. Sharief AA, Badea A, Dale AM, Johnson GA.Automated segmentation of the actively stained mouse brain using multi-spectral MR microscopy. Neuroimage 2008 Jan 1; 39(1):136-45. PMCID: PMC2139901
  2. Badea, A., Johnson, G.A., Williams, R.W., Genetic dissection of the mouse brain using high-field Magnetic Resonance Microscopy, NeuroImage (2009), doi:10.1016/j.neuroimage.2009.01.021
  3. Bastiaan Driehuys, John Nouls, Alexandra Badea, Alexandra Petiet, Elizabeth Bucholz, Ketan Ghagada, Laurence Hedlund, Small-animal imaging with magnetic resonance microscopy, invited paper, ILAR Journal Noninvasive Bioimaging of Laboratory Animals 49(1):35-53, 2008. PMID: 18172332
  4. Alexandra E. Petiet, Matthew H. Kaufman, Matthew M. Goddeeris, Jeff Brandenburg, Susan A. Elmore, G. Allan Johnson, High-resolution magnetic resonance histology of the embryonic and neonatal mouse: a 4D atlas and morphologic database, Proc Natl Acad Sci U S A. 105(34):12331-12336, 2008, PMID: 18713865. Supplementary database: http://www.civm.duhs.duke.edu/devatlas/index.html
  5. Brigman JL, Mathur P, Lu L, Williams RW, Holmes A (2008) Genetic relationship between anxiety- and fear-related behaviors in BXD recombinant inbred mice. Behavioral Pharmacology, in press. PMID: 18830130
  6. Bug W, Wong WW, Gustafson C, Johnson GA, Martone ME, Price DL, Rosen GD, Williams RW, Zaslavsky I, .Nissanov J (2007) Brain atlasing tool interoperation: NeuroTerrain-Smart Atlas synergistic visualization and analysis environment.  IEEE EMBS Conference on Neural Engineering, in press.
  7. Jan TA, Lu L, Li CX, Williams RW, Waters RS (2008) Genetic analysis of posterior medial barrel subfield (PMBSF) size in somatosensory cortex (SI) in recombinant inbred strains of mice. BMC Neuroscience 9:3. PMCID: PMC2254631
  8. Lu L, Wei L, Peirce JL, Wang X, Zhou J, Homayouni R, Williams RW, Airey DC (2008) Using gene expression databases for classical trait QTL candidate gene discovery in the BXD recombinant inbred genetic reference population: mouse forebrain weight. BMC Neuroscience 9:444. PMCID: PMC2570693
  9. Mozhui K, Ciobanu DC, Schikorski T, Wang X, Lu L, Williams RW (2008) Dissection of a QTL hotspot on mouse distal chromosome 1 that modulates neurobehavioral phenotypes and gene expression. PLoS Genetics 4(11):e1000260. PMCID: PMC2577893
  10. Reiner DJ, Jan TA, Boughter JD, Li CX, Lu L, Williams RW, Waters RS (2008) Genetic analysis of tongue size and taste papillae number and size in recombinant inbred strains of mice. Chemical Senses 33:693-707. PMID: 18653645
  11. Yang RJ, Mozhui K, Karlsson R-M, Cameron HA, Williams RW, Holmes A (2008) Variation in mouse basolateral amygdala volume is associated with differences in stress-reactivity and fear learning. Neuropsychopharmacology 33:2595-2604. PMID: 18185497
  12. Gardner D, Akil H, Van Essen DC, Williams RW (2008) The Neuroscience Information Framework: a data and knowledge environment for neuroscience. Neuroinformatics 6:149-160. PMID: 18946742

In Press Papers

  1. Beiter T, Reich E, Williams RW, Simon P (2008) Antisense transcription: a critical look in both directions. Cellular and Molecular Life Sciences in press. PMID: 18791843
  2. Rosen GL, Pung C, Owens C, Caplow J, Kim H, Lu L, Williams RW (2009) Genetic modulation of striatal volume in BXD recombinant inbred mice. Genes, Brain & Behavior, in press.

Presentations

  1. Badea, J.L. Jankowsky, G.A. Johnson, Magnetic resonance microscopy of structural changes associated with amyloid formation in a mouse model of Alzheimer’s disease, Neuroscience.
  2. 2008, Society for Neuroscience, November 15-19, 2008, Washington, DC, Alzheimers Imaging and Biomarkers III, presentation 309.8, November 17, 2008.
BIRN is supported by NIH grants 1U24-RR025736, U24-RR021992, U24-RR021760 and by the Collaborative Tools Support Network Award 1U24-RR026057-01.
 
BIRN – Biomedical Informatics Research Network |  Mouse BIRN Publications

Mouse BIRN Publications

Papers

  1. Sharief AA, Badea A, Dale AM, Johnson GA.Automated segmentation of the actively stained mouse brain using multi-spectral MR microscopy. Neuroimage 2008 Jan 1; 39(1):136-45. PMCID: PMC2139901
  2. Badea, A., Johnson, G.A., Williams, R.W., Genetic dissection of the mouse brain using high-field Magnetic Resonance Microscopy, NeuroImage (2009), doi:10.1016/j.neuroimage.2009.01.021
  3. Bastiaan Driehuys, John Nouls, Alexandra Badea, Alexandra Petiet, Elizabeth Bucholz, Ketan Ghagada, Laurence Hedlund, Small-animal imaging with magnetic resonance microscopy, invited paper, ILAR Journal Noninvasive Bioimaging of Laboratory Animals 49(1):35-53, 2008. PMID: 18172332
  4. Alexandra E. Petiet, Matthew H. Kaufman, Matthew M. Goddeeris, Jeff Brandenburg, Susan A. Elmore, G. Allan Johnson, High-resolution magnetic resonance histology of the embryonic and neonatal mouse: a 4D atlas and morphologic database, Proc Natl Acad Sci U S A. 105(34):12331-12336, 2008, PMID: 18713865. Supplementary database: http://www.civm.duhs.duke.edu/devatlas/index.html
  5. Brigman JL, Mathur P, Lu L, Williams RW, Holmes A (2008) Genetic relationship between anxiety- and fear-related behaviors in BXD recombinant inbred mice. Behavioral Pharmacology, in press. PMID: 18830130
  6. Bug W, Wong WW, Gustafson C, Johnson GA, Martone ME, Price DL, Rosen GD, Williams RW, Zaslavsky I, .Nissanov J (2007) Brain atlasing tool interoperation: NeuroTerrain-Smart Atlas synergistic visualization and analysis environment.  IEEE EMBS Conference on Neural Engineering, in press.
  7. Jan TA, Lu L, Li CX, Williams RW, Waters RS (2008) Genetic analysis of posterior medial barrel subfield (PMBSF) size in somatosensory cortex (SI) in recombinant inbred strains of mice. BMC Neuroscience 9:3. PMCID: PMC2254631
  8. Lu L, Wei L, Peirce JL, Wang X, Zhou J, Homayouni R, Williams RW, Airey DC (2008) Using gene expression databases for classical trait QTL candidate gene discovery in the BXD recombinant inbred genetic reference population: mouse forebrain weight. BMC Neuroscience 9:444. PMCID: PMC2570693
  9. Mozhui K, Ciobanu DC, Schikorski T, Wang X, Lu L, Williams RW (2008) Dissection of a QTL hotspot on mouse distal chromosome 1 that modulates neurobehavioral phenotypes and gene expression. PLoS Genetics 4(11):e1000260. PMCID: PMC2577893
  10. Reiner DJ, Jan TA, Boughter JD, Li CX, Lu L, Williams RW, Waters RS (2008) Genetic analysis of tongue size and taste papillae number and size in recombinant inbred strains of mice. Chemical Senses 33:693-707. PMID: 18653645
  11. Yang RJ, Mozhui K, Karlsson R-M, Cameron HA, Williams RW, Holmes A (2008) Variation in mouse basolateral amygdala volume is associated with differences in stress-reactivity and fear learning. Neuropsychopharmacology 33:2595-2604. PMID: 18185497
  12. Gardner D, Akil H, Van Essen DC, Williams RW (2008) The Neuroscience Information Framework: a data and knowledge environment for neuroscience. Neuroinformatics 6:149-160. PMID: 18946742

In Press Papers

  1. Beiter T, Reich E, Williams RW, Simon P (2008) Antisense transcription: a critical look in both directions. Cellular and Molecular Life Sciences in press. PMID: 18791843
  2. Rosen GL, Pung C, Owens C, Caplow J, Kim H, Lu L, Williams RW (2009) Genetic modulation of striatal volume in BXD recombinant inbred mice. Genes, Brain & Behavior, in press.

Presentations

  1. Badea, J.L. Jankowsky, G.A. Johnson, Magnetic resonance microscopy of structural changes associated with amyloid formation in a mouse model of Alzheimer’s disease, Neuroscience.
  2. 2008, Society for Neuroscience, November 15-19, 2008, Washington, DC, Alzheimers Imaging and Biomarkers III, presentation 309.8, November 17, 2008.
BIRN is supported by NIH grants 1U24-RR025736, U24-RR021992, U24-RR021760 and by the Collaborative Tools Support Network Award 1U24-RR026057-01.
 
BIRN – Biomedical Informatics Research Network |  Mouse BIRN Publications

Mouse BIRN Publications

Papers

  1. Sharief AA, Badea A, Dale AM, Johnson GA.Automated segmentation of the actively stained mouse brain using multi-spectral MR microscopy. Neuroimage 2008 Jan 1; 39(1):136-45. PMCID: PMC2139901
  2. Badea, A., Johnson, G.A., Williams, R.W., Genetic dissection of the mouse brain using high-field Magnetic Resonance Microscopy, NeuroImage (2009), doi:10.1016/j.neuroimage.2009.01.021
  3. Bastiaan Driehuys, John Nouls, Alexandra Badea, Alexandra Petiet, Elizabeth Bucholz, Ketan Ghagada, Laurence Hedlund, Small-animal imaging with magnetic resonance microscopy, invited paper, ILAR Journal Noninvasive Bioimaging of Laboratory Animals 49(1):35-53, 2008. PMID: 18172332
  4. Alexandra E. Petiet, Matthew H. Kaufman, Matthew M. Goddeeris, Jeff Brandenburg, Susan A. Elmore, G. Allan Johnson, High-resolution magnetic resonance histology of the embryonic and neonatal mouse: a 4D atlas and morphologic database, Proc Natl Acad Sci U S A. 105(34):12331-12336, 2008, PMID: 18713865. Supplementary database: http://www.civm.duhs.duke.edu/devatlas/index.html
  5. Brigman JL, Mathur P, Lu L, Williams RW, Holmes A (2008) Genetic relationship between anxiety- and fear-related behaviors in BXD recombinant inbred mice. Behavioral Pharmacology, in press. PMID: 18830130
  6. Bug W, Wong WW, Gustafson C, Johnson GA, Martone ME, Price DL, Rosen GD, Williams RW, Zaslavsky I, .Nissanov J (2007) Brain atlasing tool interoperation: NeuroTerrain-Smart Atlas synergistic visualization and analysis environment.  IEEE EMBS Conference on Neural Engineering, in press.
  7. Jan TA, Lu L, Li CX, Williams RW, Waters RS (2008) Genetic analysis of posterior medial barrel subfield (PMBSF) size in somatosensory cortex (SI) in recombinant inbred strains of mice. BMC Neuroscience 9:3. PMCID: PMC2254631
  8. Lu L, Wei L, Peirce JL, Wang X, Zhou J, Homayouni R, Williams RW, Airey DC (2008) Using gene expression databases for classical trait QTL candidate gene discovery in the BXD recombinant inbred genetic reference population: mouse forebrain weight. BMC Neuroscience 9:444. PMCID: PMC2570693
  9. Mozhui K, Ciobanu DC, Schikorski T, Wang X, Lu L, Williams RW (2008) Dissection of a QTL hotspot on mouse distal chromosome 1 that modulates neurobehavioral phenotypes and gene expression. PLoS Genetics 4(11):e1000260. PMCID: PMC2577893
  10. Reiner DJ, Jan TA, Boughter JD, Li CX, Lu L, Williams RW, Waters RS (2008) Genetic analysis of tongue size and taste papillae number and size in recombinant inbred strains of mice. Chemical Senses 33:693-707. PMID: 18653645
  11. Yang RJ, Mozhui K, Karlsson R-M, Cameron HA, Williams RW, Holmes A (2008) Variation in mouse basolateral amygdala volume is associated with differences in stress-reactivity and fear learning. Neuropsychopharmacology 33:2595-2604. PMID: 18185497
  12. Gardner D, Akil H, Van Essen DC, Williams RW (2008) The Neuroscience Information Framework: a data and knowledge environment for neuroscience. Neuroinformatics 6:149-160. PMID: 18946742

In Press Papers

  1. Beiter T, Reich E, Williams RW, Simon P (2008) Antisense transcription: a critical look in both directions. Cellular and Molecular Life Sciences in press. PMID: 18791843
  2. Rosen GL, Pung C, Owens C, Caplow J, Kim H, Lu L, Williams RW (2009) Genetic modulation of striatal volume in BXD recombinant inbred mice. Genes, Brain & Behavior, in press.

Presentations

  1. Badea, J.L. Jankowsky, G.A. Johnson, Magnetic resonance microscopy of structural changes associated with amyloid formation in a mouse model of Alzheimer’s disease, Neuroscience.
  2. 2008, Society for Neuroscience, November 15-19, 2008, Washington, DC, Alzheimers Imaging and Biomarkers III, presentation 309.8, November 17, 2008.
BIRN is supported by NIH grants 1U24-RR025736, U24-RR021992, U24-RR021760 and by the Collaborative Tools Support Network Award 1U24-RR026057-01.