Atlasing, Images and Visualization Tools

The following tools provides ways to visualize data in scientifically meaningful ways:

  • Automated Image Registration (AIR) – A tool for automated registration of 3D and 2D images within and across subjects and across imaging modalities.

  • BrainSuite – BrainSuite is a magnetic resonance (MR) image analysis tool designed for identifying tissue types and surfaces in MR images of the human head.

  • LONI Debabeler – The Debabeler is a robust and extensible tool used to create and customize translations between medical image file formats. Its visual programming environment provides an intuitive and easy way to modify a variety of existing translations to meet researchers’ needs.

  • LONI Inspector – The LONI Inspector is a Java application for reading, displaying, searching, comparing, and exporting metadata from AFNI, ANALYZE, DICOM, ECAT, GE, Interfile, MINC, and NIFTI files.

  • LONI Provenance Editor – The LONI Provenance Editor is a self-contained, platform-independent application that automatically extracts the provenance information from an image header (such as a DICOM image) and generates a data provenance XML file with that information.

  • LONI Visualization Tool (LOVE) – An interactive tool for stereotaxic brain data visualization. LOVE is a 3-D viewer that allows volumetric data display and manipulation of axial, sagittal and coronal views.

  • Mouse BIRN Atlasing Toolkit (MBAT) – MBAT provides a workflow environment bringing together online resources, a user’s image data and biological atlases in a concise, unified and intuitive workspace.

  • Registration using Embedded Maps (REM) – REM registers N-D image pairs that may contain topological differences. It produces an output reconstructed image and both a geometric and intensity transformation as a N-D vector field.

  • 3D Slicer – Open-source application that assists with the visualization, registration, segmentation, and quantification of medical image data. Development of the Slicer is an ongoing international collaboration project organized by the Surgical Planning Lab at Brigham & Women’s Hospital, an affiliate of Harvard Medical School.

  • MRI Studio – MRI Studio is a Windows-based software package, developed at Johns Hopkins University that includes support for 3D visualization, the processing of diffusion tensor data, and image registration.

BIRN is supported by NIH grants 1U24-RR025736, U24-RR021992, U24-RR021760 and by the Collaborative Tools Support Network Award 1U24-RR026057-01.
 
Biomedical Informatics Research Network (BIRN) |  Atlasing, Images and Visualization Tools

Atlasing, Images and Visualization Tools

The following tools provides ways to visualize data in scientifically meaningful ways:

  • Automated Image Registration (AIR) – A tool for automated registration of 3D and 2D images within and across subjects and across imaging modalities.

  • BrainSuite – BrainSuite is a magnetic resonance (MR) image analysis tool designed for identifying tissue types and surfaces in MR images of the human head.

  • LONI Debabeler – The Debabeler is a robust and extensible tool used to create and customize translations between medical image file formats. Its visual programming environment provides an intuitive and easy way to modify a variety of existing translations to meet researchers’ needs.

  • LONI Inspector – The LONI Inspector is a Java application for reading, displaying, searching, comparing, and exporting metadata from AFNI, ANALYZE, DICOM, ECAT, GE, Interfile, MINC, and NIFTI files.

  • LONI Provenance Editor – The LONI Provenance Editor is a self-contained, platform-independent application that automatically extracts the provenance information from an image header (such as a DICOM image) and generates a data provenance XML file with that information.

  • LONI Visualization Tool (LOVE) – An interactive tool for stereotaxic brain data visualization. LOVE is a 3-D viewer that allows volumetric data display and manipulation of axial, sagittal and coronal views.

  • Mouse BIRN Atlasing Toolkit (MBAT) – MBAT provides a workflow environment bringing together online resources, a user’s image data and biological atlases in a concise, unified and intuitive workspace.

  • Registration using Embedded Maps (REM) – REM registers N-D image pairs that may contain topological differences. It produces an output reconstructed image and both a geometric and intensity transformation as a N-D vector field.

  • 3D Slicer – Open-source application that assists with the visualization, registration, segmentation, and quantification of medical image data. Development of the Slicer is an ongoing international collaboration project organized by the Surgical Planning Lab at Brigham & Women’s Hospital, an affiliate of Harvard Medical School.

  • MRI Studio – MRI Studio is a Windows-based software package, developed at Johns Hopkins University that includes support for 3D visualization, the processing of diffusion tensor data, and image registration.

BIRN is supported by NIH grants 1U24-RR025736, U24-RR021992, U24-RR021760 and by the Collaborative Tools Support Network Award 1U24-RR026057-01.
 
Biomedical Informatics Research Network (BIRN) |  Atlasing, Images and Visualization Tools

Atlasing, Images and Visualization Tools

The following tools provides ways to visualize data in scientifically meaningful ways:

  • Automated Image Registration (AIR) – A tool for automated registration of 3D and 2D images within and across subjects and across imaging modalities.

  • BrainSuite – BrainSuite is a magnetic resonance (MR) image analysis tool designed for identifying tissue types and surfaces in MR images of the human head.

  • LONI Debabeler – The Debabeler is a robust and extensible tool used to create and customize translations between medical image file formats. Its visual programming environment provides an intuitive and easy way to modify a variety of existing translations to meet researchers’ needs.

  • LONI Inspector – The LONI Inspector is a Java application for reading, displaying, searching, comparing, and exporting metadata from AFNI, ANALYZE, DICOM, ECAT, GE, Interfile, MINC, and NIFTI files.

  • LONI Provenance Editor – The LONI Provenance Editor is a self-contained, platform-independent application that automatically extracts the provenance information from an image header (such as a DICOM image) and generates a data provenance XML file with that information.

  • LONI Visualization Tool (LOVE) – An interactive tool for stereotaxic brain data visualization. LOVE is a 3-D viewer that allows volumetric data display and manipulation of axial, sagittal and coronal views.

  • Mouse BIRN Atlasing Toolkit (MBAT) – MBAT provides a workflow environment bringing together online resources, a user’s image data and biological atlases in a concise, unified and intuitive workspace.

  • Registration using Embedded Maps (REM) – REM registers N-D image pairs that may contain topological differences. It produces an output reconstructed image and both a geometric and intensity transformation as a N-D vector field.

  • 3D Slicer – Open-source application that assists with the visualization, registration, segmentation, and quantification of medical image data. Development of the Slicer is an ongoing international collaboration project organized by the Surgical Planning Lab at Brigham & Women’s Hospital, an affiliate of Harvard Medical School.

  • MRI Studio – MRI Studio is a Windows-based software package, developed at Johns Hopkins University that includes support for 3D visualization, the processing of diffusion tensor data, and image registration.

BIRN is supported by NIH grants 1U24-RR025736, U24-RR021992, U24-RR021760 and by the Collaborative Tools Support Network Award 1U24-RR026057-01.