Biomedical Informatics Research Network (BIRN) | Ontologies, Standards and Terminologies Tools

	Biomedical Informatics Research Network (BIRN) About About: Overview BIRN Video Introduction BIRN FAQs History Executive Committee Steering Committee Presentations/Papers Media Sponsors News Contact Us Capabilities Capabilities: Overview Demos and Downloads for Featured BIRN Capabilities Current Capabilities Working with BIRN Working with BIRN: Overview FAQ BIRN User Inquiry Working Groups Data Management Working Group Derived Data Working Group Genomics Working Group Information Integration Working Group Knowledge Engineering Working Group Operations Working Group Security Working Group Workflows Working Group Mailing Lists User Stories User Stories: Overview Multi-site fMRI Studies Resources Resources: Overview Tools Acquisition, Calibration and Quality Assurance Tools Analysis and Processing Tools Atlasing, Images and Visualization Tools Data Management and Collaboration Tools Ontologies, Standards and Terminologies Tools Security Tools Federated Informatics Research Environment (FIRE) Primer fMRI Scanner Calibration Methods and Recommendations fMRI Imaging Quality Assurance Methods Multi-site Cognitive Paradigms for fMRI studies Functional Imaging Calibration Paradigms All Tools Share Your Tools Software License Best Practices Supplemental Materials FBIRN Recommendations for Multi-Center fMRI Studies: Supplemental Material (JMRI cite) Supplement I: FBIRN Working Groups Supplement II: FBIRN Task presentation/psychometric collection Supplement III: FBIRN Scan parameters Supplement IV: FBIRN Quality Assurance Program Supplement V: FBIRN Informatics References Brain Morphometry Multi-site Studies Brain Morphometry Imaging Protocols Brain Morphometry MRI Phantom DTI Multisite Processing Functional MRI Multi-site Studies Data Alphabetical List of Data Collaborators Collaborators: Overview Radiation Oncology Pilot Project Taub Institute for Research at Columbia University Clinical Translational Science Institutes (CTSIs) Function BIRN Function BIRN Publications International Neuroinformatics Coordinating Facility (INCF) Cardiovascular Research Grid Ontologies, Standards and Terminologies Tools The following tools offer schemas and terminologies that can help make sense of data from disparate sources: BXH/XCEDE Tools – A suite of tools designed to read, write and manipulate XML descriptors using the BXH or XCEDE schemas. This tool is REQUIRED for many other FBIRN tools. NeuroLex – NeuroLex is built from a core OWL ontology, originally built from BIRNLex, in a modular fashion, with separate modules covering major domains of neuroscience: anatomy, cell, subcellular, molecule, function and dysfunction. XML-Based Clinical Experiment Data Exchange Schema (XCEDE) – Provides an extensive metadata hierarchy for describing and documenting research and clinical studies. Acquisition, Calibration and Quality Assurance Tools Analysis and Processing Tools Atlasing, Images and Visualization Tools Data Management and Collaboration Tools Ontologies, Standards and Terminologies Tools Security Tools Federated Informatics Research Environment (FIRE) Primer All Tools BIRN Collaboration wiki BIRN Documentation wiki Presentations/Papers Project Management ACCESS Account Management Copyright Privacy Sitemap Contact Us BIRN is supported by NIH grants 1U24-RR025736, U24-RR021992, U24-RR021760 and by the Collaborative Tools Support Network Award 1U24-RR026057-01.

Biomedical Informatics Research Network (BIRN) | Ontologies, Standards and Terminologies Tools

	Biomedical Informatics Research Network (BIRN) About About: Overview BIRN Video Introduction BIRN FAQs History Executive Committee Steering Committee Presentations/Papers Media Sponsors News Contact Us Capabilities Capabilities: Overview Demos and Downloads for Featured BIRN Capabilities Current Capabilities Working with BIRN Working with BIRN: Overview FAQ BIRN User Inquiry Working Groups Data Management Working Group Derived Data Working Group Genomics Working Group Information Integration Working Group Knowledge Engineering Working Group Operations Working Group Security Working Group Workflows Working Group Mailing Lists User Stories User Stories: Overview Multi-site fMRI Studies Resources Resources: Overview Tools Acquisition, Calibration and Quality Assurance Tools Analysis and Processing Tools Atlasing, Images and Visualization Tools Data Management and Collaboration Tools Ontologies, Standards and Terminologies Tools Security Tools Federated Informatics Research Environment (FIRE) Primer fMRI Scanner Calibration Methods and Recommendations fMRI Imaging Quality Assurance Methods Multi-site Cognitive Paradigms for fMRI studies Functional Imaging Calibration Paradigms All Tools Share Your Tools Software License Best Practices Supplemental Materials FBIRN Recommendations for Multi-Center fMRI Studies: Supplemental Material (JMRI cite) Supplement I: FBIRN Working Groups Supplement II: FBIRN Task presentation/psychometric collection Supplement III: FBIRN Scan parameters Supplement IV: FBIRN Quality Assurance Program Supplement V: FBIRN Informatics References Brain Morphometry Multi-site Studies Brain Morphometry Imaging Protocols Brain Morphometry MRI Phantom DTI Multisite Processing Functional MRI Multi-site Studies Data Alphabetical List of Data Collaborators Collaborators: Overview Radiation Oncology Pilot Project Taub Institute for Research at Columbia University Clinical Translational Science Institutes (CTSIs) Function BIRN Function BIRN Publications International Neuroinformatics Coordinating Facility (INCF) Cardiovascular Research Grid Ontologies, Standards and Terminologies Tools The following tools offer schemas and terminologies that can help make sense of data from disparate sources: BXH/XCEDE Tools – A suite of tools designed to read, write and manipulate XML descriptors using the BXH or XCEDE schemas. This tool is REQUIRED for many other FBIRN tools. NeuroLex – NeuroLex is built from a core OWL ontology, originally built from BIRNLex, in a modular fashion, with separate modules covering major domains of neuroscience: anatomy, cell, subcellular, molecule, function and dysfunction. XML-Based Clinical Experiment Data Exchange Schema (XCEDE) – Provides an extensive metadata hierarchy for describing and documenting research and clinical studies. Acquisition, Calibration and Quality Assurance Tools Analysis and Processing Tools Atlasing, Images and Visualization Tools Data Management and Collaboration Tools Ontologies, Standards and Terminologies Tools Security Tools Federated Informatics Research Environment (FIRE) Primer All Tools BIRN Collaboration wiki BIRN Documentation wiki Presentations/Papers Project Management ACCESS Account Management Copyright Privacy Sitemap Contact Us BIRN is supported by NIH grants 1U24-RR025736, U24-RR021992, U24-RR021760 and by the Collaborative Tools Support Network Award 1U24-RR026057-01.

Biomedical Informatics Research Network (BIRN) | Ontologies, Standards and Terminologies Tools

	Biomedical Informatics Research Network (BIRN) About About: Overview BIRN Video Introduction BIRN FAQs History Executive Committee Steering Committee Presentations/Papers Media Sponsors News Contact Us Capabilities Capabilities: Overview Demos and Downloads for Featured BIRN Capabilities Current Capabilities Working with BIRN Working with BIRN: Overview FAQ BIRN User Inquiry Working Groups Data Management Working Group Derived Data Working Group Genomics Working Group Information Integration Working Group Knowledge Engineering Working Group Operations Working Group Security Working Group Workflows Working Group Mailing Lists User Stories User Stories: Overview Multi-site fMRI Studies Resources Resources: Overview Tools Acquisition, Calibration and Quality Assurance Tools Analysis and Processing Tools Atlasing, Images and Visualization Tools Data Management and Collaboration Tools Ontologies, Standards and Terminologies Tools Security Tools Federated Informatics Research Environment (FIRE) Primer fMRI Scanner Calibration Methods and Recommendations fMRI Imaging Quality Assurance Methods Multi-site Cognitive Paradigms for fMRI studies Functional Imaging Calibration Paradigms All Tools Share Your Tools Software License Best Practices Supplemental Materials FBIRN Recommendations for Multi-Center fMRI Studies: Supplemental Material (JMRI cite) Supplement I: FBIRN Working Groups Supplement II: FBIRN Task presentation/psychometric collection Supplement III: FBIRN Scan parameters Supplement IV: FBIRN Quality Assurance Program Supplement V: FBIRN Informatics References Brain Morphometry Multi-site Studies Brain Morphometry Imaging Protocols Brain Morphometry MRI Phantom DTI Multisite Processing Functional MRI Multi-site Studies Data Alphabetical List of Data Collaborators Collaborators: Overview Radiation Oncology Pilot Project Taub Institute for Research at Columbia University Clinical Translational Science Institutes (CTSIs) Function BIRN Function BIRN Publications International Neuroinformatics Coordinating Facility (INCF) Cardiovascular Research Grid Ontologies, Standards and Terminologies Tools The following tools offer schemas and terminologies that can help make sense of data from disparate sources: BXH/XCEDE Tools – A suite of tools designed to read, write and manipulate XML descriptors using the BXH or XCEDE schemas. This tool is REQUIRED for many other FBIRN tools. NeuroLex – NeuroLex is built from a core OWL ontology, originally built from BIRNLex, in a modular fashion, with separate modules covering major domains of neuroscience: anatomy, cell, subcellular, molecule, function and dysfunction. XML-Based Clinical Experiment Data Exchange Schema (XCEDE) – Provides an extensive metadata hierarchy for describing and documenting research and clinical studies. Acquisition, Calibration and Quality Assurance Tools Analysis and Processing Tools Atlasing, Images and Visualization Tools Data Management and Collaboration Tools Ontologies, Standards and Terminologies Tools Security Tools Federated Informatics Research Environment (FIRE) Primer All Tools BIRN Collaboration wiki BIRN Documentation wiki Presentations/Papers Project Management ACCESS Account Management Copyright Privacy Sitemap Contact Us BIRN is supported by NIH grants 1U24-RR025736, U24-RR021992, U24-RR021760 and by the Collaborative Tools Support Network Award 1U24-RR026057-01.